Plot
In June 2044, the Robotech Expeditionary Force (REF) fleet gathers at Moon Base ALUCE for its final attempt to drive the alien Invid from the Earth. Among the REF fighter pilots are Maia Sterling, Marcus Rush and Alex Romero, all of whom were born in space during the REF mission and have never seen Earth. General Reinhardt sends Vince Grant, captain of the Icarus, on a rescue mission to look for Rick Hunter, chief military commander of all REF forces and a legendary veteran of the First Robotech War.
Despite not having a powerful arsenal, General Reinhardt begins the attack. The assault initially goes well until the Invid Regis launches all of her remaining forces in one final wave. When Reinhardt tries to get an update from the ground forces, he makes contact with resistance leader Scott Bernard. Scott informs Reinhardt that the attack is going poorly. Ending the communication, Scott meets with Ariel, an Invid princess that looks like a young human woman, and Scott's love interest. Ariel hopes to convince her mother, the Invid Regis, that the humans and the Invid can live in peace. As the battle rages on, Ariel finally convinces her mother to leave Earth rather than allow both races to be destroyed. Ariel, after using her teleportation power to travel to Moon Base ALUCE, informs Scott that she had a vision. The Children of the Shadow are planning on attacking the REF. Scott is arrested and interrogated, where he warns of the impending attack.
Suddenly, all contact with Space Station Liberty is lost. When the Icarus arrives, Liberty is under attack by a large fleet of alien ships which have jammed all communications. The battle is going poorly for the REF; capital ships are being destroyed with just one hit. It then becomes clear that the Haydonites are in fact the Children of the Shadow, and that Ariel's warning was true. Captain Grant realizes that every piece of technology the Haydonites have given to the REF contains some kind of Trojan Horse. Unable to restore communications, Grant is unable to warn the remaining ships of these findings, and they are left to fight a hopeless battle.
Louie searches for ships that have no Shadow technology but finds only one: the massive colony ship Ark Angel. Vince orders the evacuation of all station personnel to the Ark Angel. Liberty has the remaining stockpile of Neutron-S missiles, and Vince sets one to self-destruct. The Ark Angel is able to depart as planned. The Haydonites move their fleet towards Liberty as the Neutron-S warheads detonate, destroying Liberty and the entire Haydonite fleet.
As the Ark Angel approaches Earth, Maia and Marcus console each other over the recent events. General Reinhardt gives Vince his new orders: Vince and his crew are to take the Ark Angel and attempt to locate the SDF-3, which may not have been destroyed as initially thought. As Scott and Ariel share a kiss, Louie does his best to reassure a confused and uncertain Janice that "We will win."